Package: simMP 0.17.3

simMP: Simulate Somatic Mutations in Cancer Genomes from Mutational Processes

Simulates somatic single base substitutions carried in cancer genomes. By only providing a human reference genome, substitutions that result from mutational processes operative in every cancer genome can be generated.

Authors:Nan Zhou

simMP_0.17.3.tar.gz
simMP_0.17.3.zip(r-4.5)simMP_0.17.3.zip(r-4.4)simMP_0.17.3.zip(r-4.3)
simMP_0.17.3.tgz(r-4.4-any)simMP_0.17.3.tgz(r-4.3-any)
simMP_0.17.3.tar.gz(r-4.5-noble)simMP_0.17.3.tar.gz(r-4.4-noble)
simMP_0.17.3.tgz(r-4.4-emscripten)simMP_0.17.3.tgz(r-4.3-emscripten)
simMP.pdf |simMP.html
simMP/json (API)

# Install 'simMP' in R:
install.packages('simMP', repos = c('https://solo7773.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 108 downloads 1 exports 53 dependencies

Last updated 8 years agofrom:ffefdd08f3. Checks:OK: 3 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 25 2024
R-4.5-winNOTEOct 25 2024
R-4.5-linuxNOTEOct 25 2024
R-4.4-winOKOct 25 2024
R-4.4-macNOTEOct 25 2024
R-4.3-winOKOct 25 2024
R-4.3-macNOTEOct 25 2024

Exports:simSBS

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomecodetoolscpp11crayoncurlDelayedArraydoParallelforeachformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangeshttrIRangesiteratorsjsonlitelambda.rlatticeMatrixMatrixGenericsmatrixStatsmimeopensslR6RCurlrestfulrRhtslibrjsonRsamtoolsrtracklayerS4ArraysS4VectorssnowSparseArraySummarizedExperimentsysUCSC.utilsXMLXVectoryamlzlibbioc