Package: simMP 0.17.3
simMP: Simulate Somatic Mutations in Cancer Genomes from Mutational Processes
Simulates somatic single base substitutions carried in cancer genomes. By only providing a human reference genome, substitutions that result from mutational processes operative in every cancer genome can be generated.
Authors:
simMP_0.17.3.tar.gz
simMP_0.17.3.zip(r-4.5)simMP_0.17.3.zip(r-4.4)simMP_0.17.3.zip(r-4.3)
simMP_0.17.3.tgz(r-4.4-any)simMP_0.17.3.tgz(r-4.3-any)
simMP_0.17.3.tar.gz(r-4.5-noble)simMP_0.17.3.tar.gz(r-4.4-noble)
simMP_0.17.3.tgz(r-4.4-emscripten)simMP_0.17.3.tgz(r-4.3-emscripten)
simMP.pdf |simMP.html✨
simMP/json (API)
# Install 'simMP' in R: |
install.packages('simMP', repos = c('https://solo7773.r-universe.dev', 'https://cloud.r-project.org')) |
- mutDistriWGS - Distribution of single base substitutions
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 8 years agofrom:ffefdd08f3. Checks:OK: 3 NOTE: 4. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 25 2024 |
R-4.5-win | NOTE | Oct 25 2024 |
R-4.5-linux | NOTE | Oct 25 2024 |
R-4.4-win | OK | Oct 25 2024 |
R-4.4-mac | NOTE | Oct 25 2024 |
R-4.3-win | OK | Oct 25 2024 |
R-4.3-mac | NOTE | Oct 25 2024 |
Exports:simSBS
Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomecodetoolscpp11crayoncurlDelayedArraydoParallelforeachformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangeshttrIRangesiteratorsjsonlitelambda.rlatticeMatrixMatrixGenericsmatrixStatsmimeopensslR6RCurlrestfulrRhtslibrjsonRsamtoolsrtracklayerS4ArraysS4VectorssnowSparseArraySummarizedExperimentsysUCSC.utilsXMLXVectoryamlzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Distribution of single base substitutions | mutDistriWGS |
Simulate single base substitutions | simSBS |